PRIMARY ARTICLES
PRESENT-1976
Bahar M, Sarin LP, Graham S, Pang J, Bamford DH, Stuart DI, Grimes JM. (2013). Structure of a VP1-VP3 complex suggests how birnaviruses package the VP1 polymerase. J Virol, in press.
Pietilä MK, Laurinmäki P, Russell DA, Ko C-C, Jacobs-Sera D, Butcher SJ, Bamford DH, Hendrix RW. (2013). Insights into head-tailed viruses infecting extremely halophilic archaea. J Virol, in press.
Romanovskaya A, Sarin LP, Bamford DH, Poranen MM. (2013). High-throughput purification of double-stranded RNA molecules using convective interaction media monolithic anion exchange columns. J chromatogr A 1278, 54-60. [PubMed]
Vitale R, Roine E, Bamford DH, Corcelli A. (2013). Lipid fingerprints of intact viruses by MALDI-TOF/mass spectrometry. Biochim Biophys Acta, in press.
Aalto AP, Bitto D, Ravantti JJ, Bamford DH, Huiskonen JT, Oksanen HM. (2012). Snapshot of virus evolution in hypersaline environments from the characterization of a membrane-containing Salisaeta icosahedral phage 1. Proc Natl Acad Sci U S A 109(18), 7079-7084. [PubMed]
Atanasova NS, Roine E, Oren A, Bamford DH, Oksanen HM. (2012). Global network of specific virus-host interactions in hypersaline environments. Environ Microbiol 14(2), 426-440. [PubMed]
Jaakkola ST, Penttinen RK, Vilén ST, Jalasvuori M, Rönnholm G, Bamford JKH, Bamford DH, Oksanen HM. (2012). Closely related archaeal Haloarcula hispanica icosahedral viruses HHIV-2 and SH1 have nonhomologous genes encoding host recognition functions. J Virol 86(9), 4734-4742. [PubMed]
Jaatinen ST, Happonen LJ, Laurinmäki P, Butcher SJ, Bamford DH. (2012). Corrigendum to “Biochemical and structural characterisation of membrane-containing icosahedral dsDNA bacteriophages infecting thermophilic Thermus thermophilus” [Virology 379(1) (2008) 10-19]. Virology 427(2), 224.
Kandiba L, Aitio O, Helin J, Guan Z, Permi P, Bamford DH, Eichler J, Roine E. (2012). Diversity in prokaryotic glycosylation: an archaeal-derived N-linked glycan contains legionaminic acid. Mol Microbiol 84(3), 578-593. [PubMed]
Oksanen HM, Domanska A, Bamford DH. (2012). Monolithic ion exchange chromatography methods for virus purification. Virology 434(2), 271-277. [PubMed]
Pietilä MK, Atanasova NS, Manole V, Liljeroos L, Butcher SJ, Oksanen HM, Bamford DH. (2012). Virion architecture unifies globally distributed pleolipoviruses infecting halophilic acrhaea. J Virol 86(9), 5067-5079. [PubMed]
Pietilä MK, Atanasova NS, Oksanen HM, Bamford DH. (2012). Modified coat protein forms the flexible spindle-shaped virion of haloarchaeal virus His1. Environ Microbiol, in press.
Romanovskaya A, Paavilainen H, Nygårdas M, Bamford DH, Hukkanen V, Poranen MM. (2012). Enzymatically Produced Pools of Canonical and Dicer-Substrate siRNA Molecules Display Comparable Gene Silencing and Antiviral Activities against Herpes Simplex Virus. PLoS One 7(11), e51019. [PubMed]
Sarin LP, Hirvonen JJ, Laurinmäki P, Butcher SJ, Bamford DH, Poranen MM. (2012). Bacteriophage φ6 nucleocapsid surface protein 8 interacts with virus-specific membrane vesicles containing major envelope protein 9. J Virol 86(9), 5376-5379. [PubMed]
Sarin LP, Wright S, Chen Q, Degerth LH, Stuart DI, Grimes JM, Bamford DH, Poranen MM. (2012). The C-terminal priming domain is strongly associated with the main body of bacteriophage φ6 RNA-dependent RNA polymerase. Virology 432(1), 184-193. [PubMed]
Sun X, Bamford DH, Poranen MM. (2012). Probing, by self-assembly, the number of potential binding sites for minor protein subunits in the procapsid of double-stranded RNA bacteriophage φ6. J Virol, .86(22),12208-12216. [PubMed]
Wright S, Poranen MM, Bamford DH, Stuart DI, Grimes JM. (2012). Noncatalytic ions direct the RNA-dependent RNA polymerase of bacterial double-stranded RNA virus φ6 from de novo initiation to elongation. J Virol 86(5), 2837-2849. [PubMed]
Zhang Z, Liu Y, Wang S, Yang D, Chen Y, Hu J, Chen J, Mei Y, Shen P, Bamford DH, Chen X. (2012). Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205. Virology, 434(2), 233-241. [PubMed]
Abrescia NG, Grimes JM, Oksanen HM, Bamford JK, Bamford DH, Stuart DI. (2011). The use of low-resolution phasing followed by phase extension from 7.6 to 2.5 Å resolution with noncrystallographic symmetry to solve the structure of a bacteriophage capsid protein. Acta Crystallogr D Biol Crystallogr 67(Pt 3), 228-232. [PubMed]
Graham SC, Sarin LP, Bahar MW, Myers RA, Stuart DI, Bamford DH, Grimes JM. (2011). The N-terminus of the RNA polymerase from infectious pancreatic necrosis virus is the determinant of genome attachment. PLoS Pathog 7(6), e1002085. [PubMed]
Jiang M, Osterlund P, Sarin LP, Poranen MM, Bamford DH, Guo D, Julkunen I. (2011). Innate immune responses in human monocyte-derived dendritic cells are highly dependent on the size and the 5′ phosphorylation of RNA molecules. J Immunol 187(4), 1713-1721. [PubMed]
Aalto AP, Poranen MM, Grimes JM, Stuart DI, Bamford DH. (2010). In vitro activities of the multifunctional RNA silencing polymerase QDE-1 of Neurospora crassa. J Biol Chem 285(38), 29367-29374. [PubMed]
Cvirkaitė-Krupovič V, Krupovic M, Daugelavičius R, Bamford DH. (2010). Calcium ion-dependent entry of the membrane-containing bacteriophage PM2 into its Pseudoalteromonas host. Virology 405(1), 120-128. [PubMed]
Cvirkaitė-Krupovič V, Poranen MM, Bamford DH. (2010). Phospholipids act as secondary receptor during the entry of the enveloped, double-stranded RNA bacteriophage φ6. J Gen Virol 91(Pt 8), 2116-2120. [PubMed]
Daugelavičius R, Buivydas A, Senčilo A, Bamford DH. (2010). Assessment of the activity of RND-type multidrug efflux pumps in Pseudomonas aeruginosa using tetraphenylphosphonium ions. Int J Antimicrob Agents 36(3), 234-238. [PubMed]
Krupovič M, Forterre P, Bamford DH. (2010). Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria. J Mol Biol 397(1), 144-160. [PubMed]
Krupovič M, Gribaldo S, Bamford DH, Forterre P. (2010). The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements. Mol Biol Evol 27(12), 2716-2732. [PubMed]
Krupovič M, Cvirkaitė-Krupovič V, Bamford DH. (2010). Protein A33 responsible for antibody-resistant spread of Vaccinia virus is homologous to C-type lectin-like proteins. Virus Res 151(1), 97-101. [PubMed]
Lee HC, Aalto AP, Yang Q, Chang SS, Huang G, Fisher D, Cha J, Poranen MM, Bamford DH, Liu Y. (2010). The DNA/RNA-Dependent RNA Polymerase QDE-1 Generates Aberrant RNA and dsRNA for RNAi in a Process Requiring Replication Protein A and a DNA Helicase. PLoS Biol 8(10), e1000496. [PubMed]
Pietilä MK, Laurinavičius S, Sund J, Roine E, Bamford DH. (2010). The single-stranded DNA genome of novel archaeal virus halorubrum pleomorphic virus 1 is enclosed in the envelope decorated with glycoprotein spikes. J Virol 84(2), 788-798. [PubMed]
Roine E, Kukkaro P, Paulin L, Laurinavičius S, Domanska A, Somerharju P, Bamford DH. (2010). New, closely related haloarchaeal viral elements with different nucleic acid types. J Virol 84(7), 3682-3689. [PubMed]
Jalasvuori M, Jaatinen ST, Laurinavičius S, Ahola-Iivarinen E, Kalkkinen N, Bamford DH, Bamford JK. (2009). The closest relatives of icosahedral viruses of thermophilic bacteria are among viruses and plasmids of the halophilic archaea. J Virol 83(18), 9388-9397. [PubMed]
Krupovič M, Ravantti JJ, Bamford DH. (2009). Geminiviruses: a tale of a plasmid becoming a virus. BMC Evol Biol 9, 112. [PubMed]
Kukkaro P, Bamford DH. (2009). Virus-host interactions in environments with a wide range of ionic strengths. Environ Microbiol Reports 1(1), 71-77.
Lee HC, Chang SS, Choudhary S, Aalto AP, Maiti M, Bamford DH, Liu Y. (2009). qiRNA is a new type of small interfering RNA induced by DNA damage. Nature 459(7244), 274-277. [PubMed]
Nygårdas M, Vuorinen T, Aalto AP, Bamford DH, Hukkanen V. (2009). Inhibition of coxsackievirus B3 and related enteroviruses by antiviral short interfering RNA pools produced using φ6 RNA-dependent RNA polymerase. J Gen Virol 90(Pt 10), 2468-2473. [PubMed]
Pietilä MK, Roine E, Paulin L, Kalkkinen N, Bamford DH. (2009). An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Mol Microbiol 72(2), 307-319. [PubMed]
Sarin LP, Poranen MM, Lehti NM, Ravantti JJ, Koivunen MR, Aalto AP, van Dijk AA, Stuart DI, Grimes JM, Bamford DH. (2009). Insights into the pre-initiation events of bacteriophage φ6 RNA-dependent RNA polymerase: towards the assembly of a productive binary complex. Nucleic Acids Res 37(4), 1182-1192. [PubMed]
Wallin AE, Ojala H, Žiedaitė G, Degerth L, Bamford D, Haeggström E. (2009). High-resolution optical tweezers for investigating DNA-binding/translocating molecular motors. Proc SPIE 7400.
Žiedaitė G, Kivelä HM, Bamford JK, Bamford DH. (2009). Purified membrane-containing procapsids of bacteriophage PRD1 package the viral genome. J Mol Biol 386(3), 637-647. [PubMed]
Abrescia NG, Grimes JM, Kivelä HM, Assenberg R, Sutton GC, Butcher SJ, Bamford JK, Bamford DH, Stuart DI. (2008). Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2. Mol Cell 31(5), 749-761. [PubMed]
Jäälinoja HT, Roine E, Laurinmäki P, Kivelä HM, Bamford DH, Butcher SJ. (2008). Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus. Proc Natl Acad Sci USA 105(23), 8008-8013. [PubMed]
Jaatinen ST, Happonen LJ, Laurinmäki P, Butcher SJ, Bamford DH. (2008). Biochemical and structural characterisation of membrane-containing icosahedral dsDNA bacteriophages infecting thermophilic Thermus thermophilus. Virology 379(1), 10-19. [PubMed]
Kainov DE, Mancini EJ, Telenius J, Lisal J, Grimes JM, Bamford DH, Stuart DI, Tuma R. (2008). Structural basis of mechanochemical coupling in a hexameric molecular motor. J Biol Chem 283(6), 3607-3617. [PubMed]
Kivelä HM, Abrescia NG, Bamford JK, Grimes JM, Stuart DI, Bamford DH. (2008). Selenomethionine labeling of large biological macromolecular complexes: Probing the structure of marine bacterial virus PM2. J Struct Biol 161(2), 204-210. [PubMed]
Krupovič M, Bamford DH. (2008). Archaeal proviruses TKV4 and MVV extend the PRD1-adenovirus lineage to the phylum Euryarchaeota. Virology 375(1), 292-300. [PubMed]
Krupovič M, Bamford DH. (2008). Virus evolution: how far does the double β-barrel viral lineage extend? Nat Rev Microbiol 6(12), 941-948. [PubMed]
Krupovič M, Cvirkaitė-Krupovič V, Bamford DH. (2008). Identification and functional analysis of the Rz/Rz1-like accessory lysis genes in the membrane-containing bacteriophage PRD1. Mol Microbiol 68(2), 492-503. [PubMed]
Poranen MM, Butcher SJ, Simonov VM, Laurinmäki P, Bamford DH. (2008). Roles of the minor capsid protein P7 in the assembly and replication of double-stranded RNA bacteriophage φ6. J Mol Biol 383(3), 529-538. [PubMed]
Poranen MM, Koivunen MR, Bamford DH. (2008). Nontemplated terminal nucleotidyltransferase activity of double-stranded RNA bacteriophage φ6 RNA-dependent RNA polymerase. J Virol 82(18), 9254-9264. [PubMed]
Poranen MM, Salgado PS, Koivunen MR, Wright S, Bamford DH, Stuart DI, Grimes JM. (2008). Structural explanation for the role of Mn2+ in the activity of φ6 RNA-dependent RNA polymerase. Nucleic Acids Res 36(20), 6633-6644. [PubMed]
Ravantti JJ, Ruokoranta TM, Alapuranen AM, Bamford DH. (2008). Global transcriptional responses of Pseudomonas aeruginosa to phage PRR1 infection. J Virol 82(5), 2324-2329. [PubMed]
Vilfan ID, Candelli A, Hage S, Aalto AP, Poranen MM, Bamford DH, Dekker NH. (2008). Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate. Nucleic Acids Res 36(22), 7059-7067. [PubMed]
Aalto AP, Sarin LP, van Dijk AA, Saarma M, Poranen MM, Arumae U, Bamford DH. (2007). Large-scale production of dsRNA and siRNA pools for RNA interference utilizing bacteriophage φ6 RNA-dependent RNA polymerase. RNA 13(3), 422-429. [PubMed]
Daugelavičius R, Gaidelytė A, Cvirkaitė-Krupovič V, Bamford DH. (2007). On-line monitoring of changes in host cell physiology during the one-step growth cycle of Bacillus phage Bam35. J Microbiol Methods 69(1), 174-179. [PubMed]
Gaidelytė A, Vaara M, Bamford DH. (2007). Bacteria, phages and septicemia. PLoS ONE 2(11), e1145. [PubMed]
Krupovič M, Bamford DH. (2007). Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria. BMC Genomics 8236. [PubMed]
Krupovič M, Daugelavičius R, Bamford DH. (2007). A novel lysis system in PM2, a lipid-containing marine double-stranded DNA bacteriophage. Mol Microbiol 64(6), 1635-1648. [PubMed]
Krupovič M, Daugelavičius R, Bamford DH. (2007). Polymyxin B induces lysis of marine pseudoalteromonads. Antimicrob Agents Chemother 51(11), 3908-3914. [PubMed]
Laurinavičius S, Bamford DH, Somerharju P. (2007). Transbilayer distribution of phospholipids in bacteriophage membranes. Biochim Biophys Acta 1768(10), 2568-2577. [PubMed]
Karhu NJ, Žiedaitė G, Bamford DH, Bamford JK. (2007). Efficient DNA packaging of bacteriophage PRD1 requires the unique vertex protein P6. J Virol 81(6), 2970-2979. [PubMed]
Gaidelytė A, Cvirkaitė-Krupovič V, Daugelavičius R, Bamford JK, Bamford DH. (2006). The entry mechanism of membrane-containing phage Bam35 infecting Bacillus thuringiensis. J Bacteriol 188(16), 5925-5934. [PubMed]
Huiskonen JT, de Haas F, Bubeck D, Bamford DH, Fuller SD, Butcher SJ. (2006). Structure of the bacteriophage φ6 nucleocapsid suggests a mechanism for sequential RNA packaging. Structure 14(6), 1039-1048. [PubMed]
Kivelä HM, Roine E, Kukkaro P, Laurinavičius S, Somerharju P, Bamford DH. (2006). Quantitative dissociation of archaeal virus SH1 reveals distinct capsid proteins and a lipid core. Virology 356(1-2), 4-11. [PubMed]
Krupovič M, Vilen H, Bamford JK, Kivelä HM, Aalto JM, Savilahti H, Bamford DH. (2006). Genome characterization of lipid-containing marine bacteriophage PM2 by transposon insertion mutagenesis. J Virol 80(18), 9270-9278. [PubMed]
Poranen MM, Ravantti JJ, Grahn AM, Gupta R, Auvinen P, Bamford DH. (2006). Global changes in cellular gene expression during bacteriophage PRD1 infection. J Virol 80(16), 8081-8088. [PubMed]
Ruokoranta TM, Grahn AM, Ravantti JJ, Poranen MM, Bamford DH. (2006). Complete genome sequence of the broad host range single-stranded RNA phage PRR1 places it in the Levivirus genus with characteristics shared with Alloleviviruses. J Virol 80(18), 9326-9330. [PubMed]
Salgado PS, Koivunen MR, Makeyev EV, Bamford DH, Stuart DI, Grimes JM. (2006). The structure of an RNAi polymerase links RNA silencing and transcription. PLoS Biol 4(12), e434. [PubMed]
Abrescia NG, Kivelä HM, Grimes JM, Bamford JK, Bamford DH, Stuart DI. (2005). Preliminary crystallographic analysis of the major capsid protein P2 of the lipid-containing bacteriophage PM2. Acta Crystallograph Sect F Struct Biol Cryst Commun 61(Pt 8), 762-765. [PubMed]
Bamford DH, Grimes JM, Stuart DI. (2005). What does structure tell us about virus evolution? Curr Opin Struct Biol 15(6), 655-663. [PubMed]
Bamford DH, Ravantti JJ, Rönnholm G, Laurinavičius S, Kukkaro P, Dyall-Smith M, Somerharju P, Kalkkinen N, Bamford JK. (2005). Constituents of SH1, a novel lipid-containing virus infecting the halophilic euryarchaeon Haloarcula hispanica. J Virol 79(14), 9097-9107. [PubMed]
Daugelavičius R, Cvirkaitė V, Gaidelytė A, Bakienė E, Gabrėnaitė-Verkhovskaya R, Bamford DH. (2005). Penetration of enveloped double-stranded RNA bacteriophages φ13 and φ6 into Pseudomonas syringae cells. J Virol 79(8), 5017-5026. [PubMed]
Gaidelytė A, Jaatinen ST, Daugelavičius R, Bamford JK, Bamford DH. (2005). The linear double-stranded DNA of phage Bam35 enters lysogenic host cells, but the late phage functions are suppressed. J Bacteriol 187(10), 3521-3527. [PubMed]
Laurila MR, Salgado PS, Makeyev EV, Nettelship J, Stuart DI, Grimes JM, Bamford DH. (2005). Gene silencing pathway RNA-dependent RNA polymerase of Neurospora crassa: yeast expression and crystallization of selenomethionated QDE-1 protein. J Struct Biol 149(1), 111-115. [PubMed]
Laurila MR, Salgado PS, Stuart DI, Grimes JM, Bamford DH. (2005). Back-priming mode of φ6 RNA-dependent RNA polymerase. J Gen Virol 86(Pt 2), 521-526. [PubMed]
Laurinmäki PA, Huiskonen JT, Bamford DH, Butcher SJ. (2005). Membrane proteins modulate the bilayer curvature in the bacterial virus Bam35. Structure (Camb) 13(12), 1819-1828. [PubMed]
Meier C, Mancini EJ, Bamford DH, Walsh MA, Stuart DI, Grimes JM. (2005). Overcoming the false-minima problem in direct methods: structure determination of the packaging enzyme P4 from bacteriophage φ13. Acta Crystallogr D Biol Crystallogr 61(Pt 9), 1238-1244. [PubMed]
Merckel MC, Huiskonen JT, Bamford DH, Goldman A, Tuma R. (2005). The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture. Mol Cell 18(2), 161-170. [PubMed]
Porter K, Kukkaro P, Bamford JK, Bath C, Kivelä HM, Dyall-Smith ML, Bamford DH. (2005). SH1: A novel, spherical halovirus isolated from an Australian hypersaline lake. Virology 335(1), 22-33. [PubMed]
Saren AM, Ravantti JJ, Benson SD, Burnett RM, Paulin L, Bamford DH, Bamford JK. (2005). A snapshot of viral evolution from genome analysis of the Tectiviridae family. J Mol Biol 350(3), 427-440. [PubMed]
Strömsten NJ, Bamford DH, Bamford JK. (2005). In vitro DNA packaging of PRD1: A common mechanism for internal-membrane viruses. J Mol Biol 348(3), 617-629. [PubMed]
Žiedaitė G, Daugelavičius R, Bamford JK, Bamford DH. (2005). The Holin protein of bacteriophage PRD1 forms a pore for small-molecule and endolysin translocation. J Bacteriol 187(15), 5397-5405. [PubMed]
Abrescia NG, Cockburn JJ, Grimes JM, Sutton GC, Diprose JM, Butcher SJ, Fuller SD, San Martin C, Burnett RM, Stuart DI, Bamford DH, Bamford JK. (2004). Insights into assembly from structural analysis of bacteriophage PRD1. Nature 432(7013), 68-74. [PubMed]
Benson SD, Bamford JK, Bamford DH, Burnett RM. (2004). Does common architecture reveal a viral lineage spanning all three domains of life? Mol Cell 16(5), 673-685. [PubMed]
Cockburn JJ, Abrescia NG, Grimes JM, Sutton GC, Diprose JM, Benevides JM, Thomas GJ,Jr, Bamford JK, Bamford DH, Stuart DI. (2004). Membrane structure and interactions with protein and DNA in bacteriophage PRD1. Nature 432(7013), 122-125. [PubMed]
Huiskonen JT, Kivelä HM, Bamford DH, Butcher SJ. (2004). The PM2 virion has a novel organization with an internal membrane and pentameric receptor binding spikes. Nat Struct Mol Biol 11(9), 850-856. [PubMed]
Jaatinen ST, Viitanen SJ, Bamford DH, Bamford JK. (2004). Integral membrane protein P16 of bacteriophage PRD1 stabilizes the adsorption vertex structure. J Virol 78(18), 9790-9797. [PubMed]
Kainov DE, Lisal J, Bamford DH, Tuma R. (2004). Packaging motor from double-stranded RNA bacteriophage φ12 acts as an obligatory passive conduit during transcription. Nucleic Acids Res 32(12), 3515-3521. [PubMed]
Kainov DE, Simonov V, Bamford DH, Tuma R, Gottlieb P, Wei H, Walsh MA, Belrhali H, Merckel MC. (2004). Crystallization and preliminary X-ray diffraction analysis of bacteriophage φ12 packaging factor P7. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 2), 2368-2370. [PubMed]
Kivelä HM, Daugelavičius R, Hankkio RH, Bamford JK, Bamford DH. (2004). Penetration of membrane-containing double-stranded-DNA bacteriophage PM2 into Pseudoalteromonas hosts. J Bacteriol 186(16), 5342-5354. [PubMed]
Laurinavičius S, Käkelä R, Bamford DH, Somerharju P. (2004). The origin of phospholipids of the enveloped bacteriophage φ6. Virology 326(1), 182-190. [PubMed]
Laurinavičius S, Käkelä R, Somerharju P, Bamford DH. (2004). Phospholipid molecular species profiles of tectiviruses infecting Gram-negative and Gram-positive hosts. Virology 322(2), 328-336. [PubMed]
Lisal J, Kainov DE, Bamford DH, Thomas GJ,Jr, Tuma R. (2004). Enzymatic mechanism of RNA translocation in double-stranded RNA bacteriophages. J Biol Chem 279(2), 1343-1350. [PubMed]
Makeyev EV, Bamford DH. (2004). Evolutionary potential of an RNA virus. J Virol 78(4), 2114-2120. [PubMed]
Mancini EJ, Kainov DE, Grimes JM, Tuma R, Bamford DH, Stuart DI. (2004). Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation. Cell 118(6), 743-755. [PubMed]
Mancini EJ, Kainov DE, Wei H, Gottlieb P, Tuma R, Bamford DH, Stuart DI, Grimes JM. (2004). Production, crystallization and preliminary X-ray crystallographic studies of the bacteriophage φ12 packaging motor. Acta Crystallogr D Biol Crystallogr 60(Pt 3), 588-590. [PubMed]
Salgado PS, Makeyev EV, Butcher SJ, Bamford DH, Stuart DI, Grimes JM. (2004). The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase. Structure (Camb) 12(2), 307-316. [PubMed]
Yang H, Makeyev EV, Kang Z, Ji S, Bamford DH, van Dijk AA. (2004). Cloning and sequence analysis of dsRNA segments 5, 6 and 7 of a novel non-group A, B, C adult rotavirus that caused an outbreak of gastroenteritis in China. Virus Res 106(1), 15-26. [PubMed]
Bamford DH. (2003). Do viruses form lineages across different domains of life? Res Microbiol 154(4), 231-236. [PubMed]
Cockburn JJ, Bamford JK, Grimes JM, Bamford DH, Stuart DI. (2003). Crystallization of the membrane-containing bacteriophage PRD1 in quartz capillaries by vapour diffusion. Acta Crystallogr D Biol Crystallogr 59(Pt 3), 538-540. [PubMed]
Gowen B, Bamford JK, Bamford DH, Fuller SD. (2003). The tailless icosahedral membrane virus PRD1 localizes the proteins involved in genome packaging and injection at a unique vertex. J Virol 77(14), 7863-7871. [PubMed]
Huiskonen JT, Laakkonen L, Toropainen M, Sarvas M, Bamford DH, Bamford JK. (2003). Probing the ability of the coat and vertex protein of the membrane-containing bacteriophage PRD1 to display a meningococcal epitope. Virology 310(2), 267-279. [PubMed]
Kainov DE, Butcher SJ, Bamford DH, Tuma R. (2003). Conserved intermediates on the assembly pathway of double-stranded RNA bacteriophages. J Mol Biol 328(4), 791-804. [PubMed]
Kainov DE, Pirttimaa M, Tuma R, Butcher SJ, Thomas GJ,Jr, Bamford DH, Makeyev EV. (2003). RNA packaging device of double-stranded RNA bacteriophages, possibly as simple as hexamer of P4 protein. J Biol Chem 278(48), 48084-48091. [PubMed]
Mancini EJ, Grimes JM, Malby R, Sutton GC, Kainov DE, Juuti JT, Makeyev EV, Tuma R, Bamford DH, Stuart DI. (2003). Order and disorder in crystals of hexameric NTPases from dsRNA bacteriophages. Acta Crystallogr D Biol Crystallogr 59(Pt 12), 2337-2341. [PubMed]
Männisto RH, Grahn AM, Bamford DH, Bamford JK. (2003). Transcription of bacteriophage PM2 involves phage-encoded regulators of heterologous origin. J Bacteriol 185(11), 3278-3287. [PubMed]
Ravantti JJ, Gaidelytė A, Bamford DH, Bamford JK. (2003). Comparative analysis of bacterial viruses Bam35, infecting a gram-positive host, and PRD1, infecting gram-negative hosts, demonstrates a viral lineage. Virology 313(2), 401-414. [PubMed]
Rydman PS, Bamford DH. (2003). Identification and mutational analysis of bacteriophage PRD1 holin protein P35. J Bacteriol 185(13), 3795-3803. [PubMed]
Strömsten NJ, Bamford DH, Bamford JK. (2003). The unique vertex of bacterial virus PRD1 is connected to the viral internal membrane. J Virol 77(11), 6314-6321. [PubMed]
Strömsten NJ, Benson SD, Burnett RM, Bamford DH, Bamford JK. (2003). The Bacillus thuringiensis linear double-stranded DNA phage Bam35, which is highly similar to the Bacillus cereus linear plasmid pBClin15, has a prophage state. J Bacteriol 185(23), 6985-6989. [PubMed]
Xu L, Benson SD, Butcher SJ, Bamford DH, Burnett RM. (2003). The receptor binding protein P2 of PRD1, a virus targeting antibiotic-resistant bacteria, has a novel fold suggesting multiple functions. Structure (Camb) 11(3), 309-322. [PubMed]
Yang H, Gottlieb P, Wei H, Bamford DH, Makeyev EV. (2003). Temperature requirements for initiation of RNA-dependent RNA polymerization. Virology 314(2), 706-715. [PubMed]
Yang H, Makeyev EV, Butcher SJ, Gaidelytė A, Bamford DH. (2003). Two distinct mechanisms ensure transcriptional polarity in double-stranded RNA bacteriophages. J Virol 77(2), 1195-1203. [PubMed]
Bamford DH, Burnett RM, Stuart DI. (2002). Evolution of viral structure. Theor Popul Biol 61(4), 461-470. [PubMed]
Bamford JK, Cockburn JJ, Diprose J, Grimes JM, Sutton G, Stuart DI, Bamford DH. (2002). Diffraction quality crystals of PRD1, a 66-MDa dsDNA virus with an internal membrane. J Struct Biol 139(2), 103-112. [PubMed]
Benevides JM, Juuti JT, Tuma R, Bamford DH, Thomas GJ,Jr. (2002). Characterization of subunit-specific interactions in a double-stranded RNA virus: Raman difference spectroscopy of the φ6 procapsid. Biochemistry 41(40), 11946-11953. [PubMed]
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Bamford DH. (1981). Lipid-containing bacterial viruses: disruption studies on φ6. Prog Clin Biol Res 64477-489. [PubMed]
Bamford DH, Rouhiainen L, Takkinen K, Soderlund H. (1981). Comparison of the lipid-containing bacteriophages PRD1, PR3, PR4, PR5 and L17. J Gen Virol 57(Pt 2), 365-373. [PubMed]
Romantschuk M, Bamford DH. (1981). Phi6-resistant phage-producing mutants of Pseudomonas phaseolicola. J Gen Virol 56(Pt 2), 287-295. [PubMed]
Bamford DH, Mindich L. (1980). Electron microscopy of cells infected with nonsense mutants of bacteriophage φ6. Virology 107(1), 222-228. [PubMed]
Bamford DH, Palva ET. (1980). Structure of the lipid-containing bacteriophage φ6. Disruption by Triton X-100 treatment. Biochim Biophys Acta 601(2), 245-259. [PubMed]
Lundström KH, Bamford DH, Palva ET, Lounatmaa K. (1979). Lipid-containing bacteriophage PR4: structure and life cycle. J Gen Virol 43(3), 583-592. [PubMed]
Bamford DH, Lounatmaa K. (1978). Freeze-fracturing of Pseudomonas phaseolicola infected by the lipid-containing bacteriophage φ6. J Gen Virol 39161-170.
Liljeström PT, Bamford DH. (1978). Genetics of plaque-size mutants of double-stranded RNA bacteriophage φ6. Hereditas 88(1), 135-137. [PubMed]
Bamford D, Sorsa M, Gripenberg U, Laamanen I, Meretoja T. (1976). Mutagenicity and toxicity of amitrole. III. Microbial tests. Mutat Res 40(3), 197-202. [PubMed]
Bamford DH, Palva ET, Lounatmaa K. (1976). Ultrastructure and life cycle of the lipid-containing bacteriophage φ6. J Gen Virol 32(2), 249-259. [PubMed]
Laamanen I, Sorsa M, Bamford D, Gripenberg U, Meretoja T. (1976). Mutagenicity and toxicity of amitrole. I. Drosophila tests. Mutat Res 40(3), 185-190. [PubMed]
Meretoja T, Gripenberg U, Bamford D, Laamanen I, Sorsa M. (1976). Mutagenicity and toxicity of amitrole. II. Human lymphocyte culture tests. Mutat Res 40(3), 191-196. [PubMed]