TOM 25.04.2018

Venue: Viikki Infocenter room 139, live stream in Meilahti Terkko auditorium 2013

Timing: 16:00 onwards

Presenter: Rishi Das Roy

4-RNA-seq

At present RNA-sequencing is a very popular method to measure gene expressions. The data generated from sequencing machines are required to go through QC, filtering and quantification steps or pipeline ( collection of softwares). There are plenty of tutorials in the internet or workshops available to learn any of these pipelines. However, many times they are difficult to implement/install in users own desktop or server (like Taito supercluster of CSC).

Here, I present a pipeline 4-RNA-seq which can be easily installed in any Slurm based job scheduling system such as Taito. Further, I will discuss how to execute and customize it.

Target audience : Those who want to make their own pipeline in superclusters.

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For those who are unable to go to Viikki, we have booked Terkko auditorium 2013 in Meilahti, where you can follow live stream of this month’s TOM session

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