Minutes of Lab Meeting 9th March 2010

In attendance: Pedro, Matt, Fang, Titta.

Section 1: Agenda

1. We will have one student for Summer Practicals working with Matt, Pedro, and Fang:  Her name is Noora Imberg.

We will try to meet with her on Thursday 11th March to establish a timetable for her work which suits everyone, place for her to work, and reading list etc.
She will have the opportunity to use the laptop in Matt’s office if neccessary.

2. Conferences and Meetings

Fang is attending the 2nd half of her course in Turku on 10-11th March.
She will present her paper on Stomatal Control (see below)

Pedro is attending the inaugural COST UV4growth meeting in Brussels
Away6-8th April. Matt will cover the Ecosystem Ecology Lecture (Plant Communities and Ecosystems).

Pedro is attending the BES PEP group meeting on the 26-28th April.
Matt (26th 27th) and Fang (28th) will cover for him on the Ecosystem Ecology practical course with the students.

Matt is attending COST EU-Beech final meeting in Burgos, Spain:
Co-author / author presenter of 5-6 papers (posters or orals), and on the scientific/organising committees.
Away 28th April – 11 May – will do some field and lab work whilst away at the site in La Rioja and at INIA in Madrid.

We will also look at the possibility of attending the BES annual meeting in Leeds and UNEP meetings in Lancaster at the same time in early September 2010 – watch for BES abstract submission deadline.

3. Papers: Published, Submitted, Rejected.

Titta’s GCB paper (will query this) and Physiologia Plantarum paper (to be resubmitted), Luis’ Tree Physiology paper (minor comments), Matt’s submission to Methods in Ecology and Evolution. Pedro submitted a paper on effects of boron.

4. Titta’s thesis, and Viva. May 7th will take place in Jyväskylä. Travel arrangements should be made individually, but let Titta know if you are planning to attend to get details of the event.  If going on the train, with Pedro and Nigel (Will Nigel give a seminar?), tickets should be bought well in advance to get the best deal. Otherwise, can think about car pooling..?

We will plan for some practice questions for Titta, at her convenience.

5. Selection of paper for Journal Discussion group.

The paper selected is by Ariel Novoplansky’s Group:

Falik, O.; Reides, P.; Gersani, M. & Novoplansky, A. Self/non-self discrimination in roots Journal of Ecology, 2003, 91, 525–531

Details available on this blog

If you feel keen, you can also read the sister paper which gives a more upto data synthesis of this work.

Discussion will take place on Tuesday 23rd March in the seminar group 5th floor of Biocentre 3 at 12:30.

6. Suggestions for additional participation in the group?  Meetings, Journal Discussion

We will invite Rachael Strickman (and associates?). The attendees at Heikki Haninnen’s seminar series. And Noora, of course.

Section 2: Business arising form the previous group meeting.

–          Fang gave a practice of her presentation for Turku. “Stomatal Response to Environmental Stress”. Which was well received and discussed.

–          Sari’s presentation of her phenolic results will take place when convenient within the next few months – not on a Tuesday

–          Other grants and collaborations to apply for funding? See what is available, in particular for collaborations and visits.

–          Summer research plans? Next time.  Matt will start most experiments in 2nd week of May. Fang’s research plan is advancing.

Any other business

–          Tania de la Rosa may be in Helsinki soon: invite her to give us a presentation

–          Pedro will buy some books from Oxford University Press, courtesy of Journal of Experimental Botany

The group will buy a clamp-stand to hold the camera for photographing the arabidopsis plants for leaf area prior to and following gas exchange measurements.

Next meeting is planned for 12th April at 12:00 noon in the seminar room on the 5th floor of Biocentre 3

Admin update

I finally managed to add the Meta widget to the home page. Now you can login from there and also access the Dashboard for writing new posts. Should make commenting and posting a bit easier.

I enabled WP-SpamFree as we were getting comment spam, mostly in Russian. Let’s see how it works.

Podcasts

If you have an MP3 player, or the like, and the transport strike is giving you extra time at the bus stop, or you have something else tedious to do and need a distraction, you might be interested in something ecological to listen to.

Here are some of my recommendations. I would be interested to hear about any of Journals or bodies in Plant Science whose output I might have missed or that your would recommend!

The Ecological Society of America (ESA) has various series of podcasts – but the most interesting tends to be Beyond the Frontier every 2 months, where the author from a featured paper from each issue of Frontiers in Ecology and Evolution is interviewed. URL feed

The Nature podcast is weekly and complements quite closely the content of the News and Opinion sections of the Journal. It provides an easy introduction to some of the less accessible subjects covered that I might otherwise skip over while reading it. The presentation style is very professional and it usually contains several interviews with lead authors. URL feed

For something lighter, I particularly enjoy the BBC’s natural history podcast. Typically a half-hour radio programme from the BBC’s weekly output is selected. My favourite is the Living World (which I have listened to since I was a young child!) where habitats or species from the British countryside are covered in situ and with a high level of expertise.  URL feed

They have a vast archive of Living World programmes on-line which serve as a fabulous resource.  Last year an interesting interview with Lynn Margulis was broadcast too.

Various US Universities, particularly UC Berkeley, put their lectures on-line with open access. These are sometimes a bit rough and ready being simply audio recordings of classes, but they can serve as refreshers for half-forgotten topics, or stimulate ideas for how one might present an area in class oneself. Do you have any plans to Podcast your lectures Pedro?

Minutes of Lab Meeting 9th Feb

In attendence: Pedro, Matt, Titta, Luis, Fang, Sari.

1. Report by Fang on her course in Turku on Photosynthesis in Plants and Cyanobacteria.
She will give a presentation for the 2nd half of the course on March 11th, on “Stomatal Response to Environmental Stress”.  She will give a practice run-through of this presentation at our next group meeting in March.

2. Update by Sari on her Results, particularly HPLC analysis of flavonoids.
At the next group meeting (or during the interim period on the blog) she will show some graphs of the (1) qualitative and quantitative response of phenolic compounds, and (2) plant growth, and (3) absorbance measured by the dualex, to light of different colours. The group will provide feedback on possible analysis techniques.

3. Copies of Nature and some assorted Spanish journals will be available in Matt’s office. If you have some comments on the articles in Nature, let Matt know, since he has to report back to them on the content.

4. Communications. Pedro, Fang, and Matt are trialing google-wave to see if it is useful. Likewise, google-calendar, which may be an alternative to the sign-up book for use of the Walz GFS-3000 IRGA. We will discuss this at a meeting for Walz GFS and PAM users. Use of this blog for discussion of interesting books, papers, webpages, and statistics was highlighted by Pedro.  Try to post information of some general interest (not limited to the research group), and no privileged information. Update alerts can be obtained using the RSS feed.

5. At the next group meeting (9th March) each member will bring a draft of their summer research plan, to start coordinating the timing for use of the equipment, technical help and greenhouse space.

6. Journal Discussion Group. This is tentatively proposal to run once-a-month at first, like the lab meetings on the 4th Tuesday of the month. To kick off, on Feb 23rd, we suggest using the blog for each member to propose at least one paper that they would like to discuss, and building a consensus around one favourite to start with.

7. There will be a research group dinner on Tuesday 16th February in the centre of Helsinki.  There will also be a group ‘activity’ (football?) yet to be finalised to pull participants away from their computers….

8. Pedro reported on the proposal submitted on the Finnish Academy of Sciences for a project on Integration of environmental signals by plants: phenomenon, mechanisms, and consequences for stomatal acclimation to drought and shade. Outlining the content and some proposed collaborators.

An easy recipe for writing a scientific paper

How to Write and Illustrate a Scientific Paper

By Björn Gustavii

Cambridge University Press

First edition in 2002

Second edition in 2008

Honestly this is the only writing guide book until now that can make me miss the bus stop I should jump off at. Poor Matt recommended and lent it to me, but because I read it a lot on the way home, it is already not that new as he gave it to me. I still hold the book and hope somebody else can ask for this book from Matt after reading this post. Then I can deny it is my fault.
Continue reading “An easy recipe for writing a scientific paper”

IUFRO press release from Copenhagen Climate Change in Northern Forests

Will northern forests be able to stand the heat?

Boreal forests are especially sensitive to global warming and are likely to be severely affected by climate change. (Copenhagen, 13 December 2009)

pdf of cited article Kellomäki et al. 2008

Here are some more links from the IUFRO beech group

TREES: A LOW-COST CLIMATE MITIGATION TOOL

The story relates to climate change and how forests provide an opportunity to reduce CO2 from the atmosphere. Photos, translations and other links are also available on this page:

I am pleased to announce that you can now also follow us on twitter as well as you can read and comment our blog. IUFRO is looking forward to receiving your feedback!

http://www.twitter.com/iufro
http://theiufroblog.wordpress.com