Prof. Herbert Sixta | Prof. Susanne Wiedmer |
Dr. Lasse Kyllönen | Prof. Emily Cranston |
Dr. Seema Singh | Prof. Timo Repo |
Dr. Michael Hummel | Dr. Jesus Perea-Buceta |
Prof. Martin Lawoko |
This python (python.org) script (neb_energies.py) can be used for parsing the neb_*.xyz ouput geometries (where * is the geometry frame number) from a nudged elastic band (NEB) ‘transition-state’ search in Terachem (petachem.com). It extracts the energies (in Hartrees) for each frame from the xyz files and plots them using matplotlib (matplotlib.org) for quick viewing.